RetrogeneDB ID: | retro_etel_990 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_197532:6764..7481(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FDPS | ||
Ensembl ID: | ENSETEG00000001154 | ||
Aliases: | None | ||
Description: | farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631] |
Percent Identity: | 84.71 % |
Parental protein coverage: | 67.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YAQEKENFIQHFSHVLKVLVEDDLGHPETGDAVARLKKVLEYNVI-GGKYNRGMTVVAVFQALAEPGQQD |
.AQEK.NFIQHFSHVLKVL.EDD.GH..TGDAVARL.KV.EYNV..GGKYNRG..VVAVFQALAEP..QD | |
Retrocopy | HAQEKQNFIQHFSHVLKVLTEDDWGHTKTGDAVARLWKVPEYNVA<GGKYNRGVLVVAVFQALAEPRKQD |
Parental | ADSLQRALTVGWCVELLQAFLLILDDIMDSSLTRRGQPCWYQKPGIGLDAINDAMLLESSIYRLLKFYCR |
ADSLQRAL.VGW.VELLQAFLLILDDIMDSSLTRRGQPCWYQKPGIGLDAI.DAMLLE.SIYRL.K..CR | |
Retrocopy | ADSLQRALIVGWWVELLQAFLLILDDIMDSSLTRRGQPCWYQKPGIGLDAISDAMLLEFSIYRLVKLHCR |
Parental | GQPYYLNLMELFLESSYQTEIGQTLDLITAPQGNVDLSRFTPKRYKSIVKYKTSFYSFYHPVAAAMYMAG |
GQP.YL.L.ELFLE.S.QTE.GQTLDLITAPQGN.DLSRFTPKRYKSIVKYKTSFYSFY.PVAAA...AG | |
Retrocopy | GQPHYLHLLELFLERSHQTEKGQTLDLITAPQGNADLSRFTPKRYKSIVKYKTSFYSFYRPVAAATSEAG |
Parental | ID-GEKEHADAKRILLEMGEYFQIQDDYLDLF |
ID.GE.EHADAK.ILLEMGEYFQIQDD.LDL. | |
Retrocopy | ID>GE-EHADAKQILLEMGEYFQIQDDSLDLW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030749 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008364 | 11 retrocopies | |
Echinops telfairi | ENSETEG00000001154 | 6 retrocopies | |
Homo sapiens | ENSG00000160752 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000007468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023144 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059743 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012099 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000000747 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001422 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000043377 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004475 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013326 | 1 retrocopy |