RetrogeneDB ID: | retro_fcat_1007 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:144023719..144024132(+) | ||
Located in intron of: | ENSFCAG00000029187 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013038 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.05 % |
Parental protein coverage: | 81.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GATAFLKYWSSVL-VRKFTDKHEWITTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALES |
GA...L...S..L.V.KFTDKHEWITTENGIGTV.ISNFAQEALGD.VYCSLPEVGTKLNKQEEFGALES | |
Retrocopy | GAIRMLRTGSALLSVHKFTDKHEWITTENGIGTVRISNFAQEALGDDVYCSLPEVGTKLNKQEEFGALES |
Parental | VKAASELYSPLSGEVTEINEAL-AENPGLVNKSCYEDGWLIKITLSNPSELDELMSEEAYEKYIKSIEE |
VKAASELYSPLSGEVTEINEAL..ENPGLVNKSCYEDGWLIKITL.NPSELDELM.EEAYEKYIK.I.E | |
Retrocopy | VKAASELYSPLSGEVTEINEAL<CENPGLVNKSCYEDGWLIKITLINPSELDELMCEEAYEKYIKPIDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 11 .71 RPM |
SRP017611_kidney | 2 .37 RPM | 85 .54 RPM |
SRP017611_liver | 1 .11 RPM | 53 .88 RPM |