RetrogeneDB ID: | retro_fcat_1013 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:21590942..21591207(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028209 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NME4 | ||
Ensembl ID: | ENSFCAG00000008300 | ||
Aliases: | None | ||
Description: | NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:7852] |
Percent Identity: | 54.95 % |
Parental protein coverage: | 51.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ETVLAEHYHDLRRKPFYPA----LISYMTSGPVVAMVWEGPNVVCSSR-AMIGHTNSAEAAPG-TIRGDF |
...L.EHY..L..KPF.PA.....IS...S.P..A.VW.GP.V.C.S..A..GHTNSAEA.P..T.R.DF | |
Retrocopy | QSALTEHYRGLQGKPFHPALISYIISHVSSSPMMAVVWKGPSVACTSK<ALEGHTNSAEAVPS<TNREDF |
Parental | SIHISRNIVHASDSVEGAQRE |
...ISRN..H.SDS.EGAQRE | |
Retrocopy | GVCISRNVIHTSDSMEGAQRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .31 RPM |
SRP017611_liver | 0 .00 RPM | 16 .48 RPM |