RetrogeneDB ID: | retro_fcat_1015 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:31569908..31570227(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000027606 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.82 % |
Parental protein coverage: | 54.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKNHEPDDTVKE-DLIFNIITRK-INHLPEAERNLFEHGSVYIGLNAALCGLIANSLFRRILNVTQARIA |
M.N.EPDD.VKE..LIF..ITRK.IN.LPEAERNLFEHGS.YIGLNAA.CGL.ANSL...ILNVTQA.IA | |
Retrocopy | MDNREPDDIVKE<NLIFSTITRK<INELPEAERNLFEHGSTYIGLNAAFCGLRANSLYQHILNVTQAHIA |
Parental | AGLPMAVIPFLTAHASYKAFVNLPLNTGDLNCETCTITR |
AGLP.AVIPF.TAHASYK.FVNLPLNT.DL.CETCTIT. | |
Retrocopy | AGLPIAVIPFITAHASYKGFVNLPLNTDDLTCETCTITQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 15 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .34 RPM |
SRP017611_liver | 0 .00 RPM | 12 .74 RPM |