RetrogeneDB ID: | retro_fcat_1025 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:45240510..45240825(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025923 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | JTB | ||
Ensembl ID: | ENSFCAG00000012590 | ||
Aliases: | None | ||
Description: | jumping translocation breakpoint [Source:HGNC Symbol;Acc:6201] |
Percent Identity: | 76.42 % |
Parental protein coverage: | 71.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AFTLKLCQAEAPVRAEKLSVSTSNLPCWLVEEFVVAEECAPCSNFQAK--TTPECGSTGYVEKITCSSSK |
A.TL..CQ.EAPV.A.KLSVS.SN.P.WL..EFVVAE.CAPCSNFQA.....PECGSTGYVEK.TCSSSK | |
Retrocopy | ACTLNPCQSEAPVPAQKLSVSASNSPGWLLQEFVVAEACAPCSNFQANHDPRPECGSTGYVEKSTCSSSK |
Parental | RNELKSCRSALMEQHLFWKFEGAVVGVALVFACLVI |
RNELKSCRSAL.E.H.FWK.EG.VVGVALVFA.L.I | |
Retrocopy | RNELKSCRSALVEHH-FWKSEGSVVGVALVFA*LAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 37 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 38 .13 RPM |
SRP017611_liver | 0 .00 RPM | 24 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002520 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009973 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000740 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008256 | 1 retrocopy | |
Felis catus | ENSFCAG00000012590 | 2 retrocopies |
retro_fcat_1025 , retro_fcat_1838,
|
Myotis lucifugus | ENSMLUG00000013299 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011788 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000003210 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000791 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006559 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012646 | 1 retrocopy |