RetrogeneDB ID: | retro_fcat_1026 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:46141401..46141694(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013142 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.68 % |
Parental protein coverage: | 68.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EMGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAK-RSK- |
.MGKF..PGKVVL.LAG.YSG...VIVKNID.G.SD...SH.L.AGID.Y..KVTAAMGKKK....RSK. | |
Retrocopy | KMGKFTEPGKVVLLLAGHYSGHRVVIVKNIDNGASDCS*SHVLLAGIDCYLLKVTAAMGKKKTPR<RSKT |
Parental | -IKSFVKVYNYNHLMPTRYSVDIPLDKTV |
..KS.VKV.NYN.L.PTRYSVD..LDK.V | |
Retrocopy | KFKS*VKVCNYNQLVPTRYSVDVVLDKNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 52 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .38 RPM |
SRP017611_liver | 0 .00 RPM | 104 .73 RPM |