RetrogeneDB ID: | retro_fcat_1032 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:58434382..58434801(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000001762 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.74 % |
Parental protein coverage: | 88.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAE |
...SKN.T.H.QS.K.HRN.IKKP.SQ.YESLK...P.FLRN.RFAKKH.KKGLKKMQ.NNAKAM....E | |
Retrocopy | VVNSKNCTSHIQSKK*HRNSIKKPQSQ*YESLKVLKPMFLRNIRFAKKHSKKGLKKMQPNNAKAMNTCVE |
Parental | AIKA-LVKPKEVKPKIPKGGSRKLNRLAYIAHPKLGKRARARIAKGLRLCRPKAKAKAQTKAQPAAATPA |
AIKA.L.KPK......PK..S.K...L.YIAHPK..K.....I.K.LRLC.PK.K.K.Q.K..P....P. | |
Retrocopy | AIKA<LIKPKRSSSRPPK--SCKCS*LTYIAHPKFQKHVHVHITKDLRLCQPKTKTKVQIKTKPMGPDPT |
Parental | PAP |
.AP | |
Retrocopy | QAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 325 .66 RPM |
SRP017611_liver | 0 .00 RPM | 156 .99 RPM |