RetrogeneDB ID: | retro_fcat_104 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:86115075..86115732(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000027674 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HPRT1 | ||
Ensembl ID: | ENSFCAG00000004575 | ||
Aliases: | None | ||
Description: | Hypoxanthine phosphoribosyltransferase 1 [Source:UniProtKB/TrEMBL;Acc:Q001C4] |
Percent Identity: | 93.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SPTLRISDDEPGYDLDLFCIPHHYAEDLEKVFIPHGLIMDRTERLARDVLKEMGGHHIVALCVLKGGYKF |
SP...ISDDE.GYDLDLFCIP.HYA.DLEKVFIPHGLIMDRTERLARDV.KEMG.HHIVALCVLKGGYKF | |
Retrocopy | SPSIVISDDESGYDLDLFCIPNHYAQDLEKVFIPHGLIMDRTERLARDVMKEMGNHHIVALCVLKGGYKF |
Parental | FADLLDYIKALNRNSDGSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQ |
FADLLDYIKALNRNSD.SIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQ | |
Retrocopy | FADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQ |
Parental | TLLSMVKQHNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKA |
TLLS.VKQ.NPKMV.VASLLVKRTPRSVGY.PDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKA | |
Retrocopy | TLLSLVKQYNPKMVRVASLLVKRTPRSVGYRPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKA |
Parental | KYKA |
KYKA | |
Retrocopy | KYKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .56 RPM | 57 .85 RPM |
SRP017611_kidney | 5 .05 RPM | 22 .88 RPM |
SRP017611_liver | 4 .14 RPM | 12 .33 RPM |