RetrogeneDB ID: | retro_fcat_1066 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:117244350..117244782(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIA | ||
Ensembl ID: | ENSFCAG00000009159 | ||
Aliases: | PPIA, MT-ND1, MTND1, NADH1, ND1, cypA | ||
Description: | Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:Q8HXS3] |
Percent Identity: | 84.03 % |
Parental protein coverage: | 93.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VLQLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFIL |
...LFADKVPK.AENF.ALS.GEKG.GYKGSCFHRII.GFMCQGGDFT.H.GTG..SIYGEKFDDE.FIL | |
Retrocopy | ISKLFADKVPKMAENFHALSIGEKGLGYKGSCFHRIILGFMCQGGDFTCHDGTGSRSIYGEKFDDESFIL |
Parental | KHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIAD |
KHTGPGILS.ANAGPNTNGS.FF.CTAKTEWLDGKHVV.G..KEGMN.VEAM..FGSRNGKTSKKIT.AD | |
Retrocopy | KHTGPGILSTANAGPNTNGSEFFTCTAKTEWLDGKHVVSGKLKEGMNTVEAMRHFGSRNGKTSKKITTAD |
Parental | CGQI |
CGQI | |
Retrocopy | CGQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .69 RPM | 129 .35 RPM |
SRP017611_kidney | 1 .24 RPM | 193 .34 RPM |
SRP017611_liver | 1 .52 RPM | 71 .07 RPM |