RetrogeneDB ID: | retro_fcat_1072 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:136235861..136236565(-) | ||
Located in intron of: | ENSFCAG00000022664 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000015442 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB7 | ||
Ensembl ID: | ENSFCAG00000015654 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 7 [Source:HGNC Symbol;Acc:24986] |
Percent Identity: | 55.1 % |
Parental protein coverage: | 73.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDGKCLKSDYYYDK |
MVDYYEV.GVQR.AS.EDIKK.YRK.ALKWHPDKN................AYEVLS.....K.D..YDK | |
Retrocopy | MVDYYEVQGVQRYASPEDIKKSYRKVALKWHPDKNXXXXXXXXXXXXXXXXAYEVLSNNE--KRD-IYDK |
Parental | YGKEGLNGGGGGGVHFDHPFDFGFTFRNP-DDVFREFFGGRDPFSFDFFEDPFEDFFGSRRGPRGSRNQG |
YG.EGLNGG.....HFD..F..GFTFR.P..DV.RE.FG.RDPFSF.FFED..ED...S.RG.......G | |
Retrocopy | YGQEGLNGGSRS--HFDDSFEYGFTFRKP<NDVCREIFGERDPFSFHFFEDSLEDLLNSPRG--SYESSG |
Parental | PGSFFSAFSGFPSFGGGFSSLDTGFTSFGSAGHGGLTSFSSTAFGGSGMGSFKSISTSTKMVNGRKITTK |
..SFF...S..P.F...FSS..TG....GS.GH.GL.SFSS.A...S.MG...S..TS.K..NG....T. | |
Retrocopy | TKSFFATSSEYPVF-ERFSSYATGYIPYGSPGHEGLNSFSSLASDNSRMGNYRSVKTSGKTANGKNTNTQ |
Parental | RIVENGEERVEVEENGQLKSLTINGVADEAALQEE |
RI.EN..ER.EVE..G.LKS..INGVADE....EE | |
Retrocopy | RIIENDQER-EVEDDGELKSFLINGVADEEGFAEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .21 RPM | 21 .54 RPM |
SRP017611_liver | 0 .00 RPM | 11 .73 RPM |