RetrogeneDB ID: | retro_fcat_1083 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:37200537..37200849(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000006742 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.74 % |
Parental protein coverage: | 69.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTG-RVMLGETNPADSKPGTIRGDFCIQVGR-N |
LKQ.YI.L.D.P...GL....NSGPVVA.VWEGLNVV..G..VM.GE.NP..SK.GT..G.FCI.VGR.N | |
Retrocopy | LKQPYISL*DCPLSLGLETDRNSGPVVATVWEGLNVVRPG<SVMPGESNPVGSKLGTHQGHFCIRVGR<N |
Parental | IIHGSDSVKSAEKEISLWFKPEELV-DYKPCAFDWIYE |
I.H.SDSV.SA.K.ISL..KPEELV.DYKPCAF...YE | |
Retrocopy | IVHSSDSVNSADKGISLHLKPEELV<DYKPCAFHQNYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .20 RPM |
SRP017611_kidney | 0 .10 RPM | 64 .62 RPM |
SRP017611_liver | 0 .00 RPM | 32 .65 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008022 | 3 retrocopies | |
Bos taurus | ENSBTAG00000047186 | 1 retrocopy | |
Equus caballus | ENSECAG00000021658 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003783 | 2 retrocopies | |
Felis catus | ENSFCAG00000006742 | 5 retrocopies | |
Felis catus | ENSFCAG00000008300 | 3 retrocopies | |
Homo sapiens | ENSG00000011052 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007784 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016929 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000001940 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015573 | 4 retrocopies | |
Mus musculus | ENSMUSG00000020857 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002671 | 8 retrocopies | |
Sus scrofa | ENSSSCG00000017591 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013053 | 6 retrocopies | |
Tursiops truncatus | ENSTTRG00000007433 | 1 retrocopy |