RetrogeneDB ID: | retro_fcat_1097 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:75290056..75290426(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAN | ||
Ensembl ID: | ENSFCAG00000027375 | ||
Aliases: | None | ||
Description: | RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846] |
Percent Identity: | 80. % |
Parental protein coverage: | 60.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL-RDGYY |
.LVLVGDGGTGKT.F.K.HLTGEFEK...A.LGVE.HP.VFH.NRGPIKFN.W..AGQ.KFGGL.RD.YY | |
Retrocopy | KLVLVGDGGTGKTMFMKCHLTGEFEK*-AAILGVEIHPFVFHDNRGPIKFNIWNAAGQGKFGGL>RDDYY |
Parental | IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS |
IQA.C.IIMFDVTSRV.YKNVP.WHRDLV..CENIPIVLCGNKVDIKDRK..AKS | |
Retrocopy | IQARCTIIMFDVTSRVSYKNVPDWHRDLVQICENIPIVLCGNKVDIKDRKGTAKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 66 .16 RPM |
SRP017611_liver | 0 .00 RPM | 39 .43 RPM |