RetrogeneDB ID: | retro_fcat_1113 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:104082407..104082716(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GPX4 | ||
Ensembl ID: | ENSFCAG00000022744 | ||
Aliases: | None | ||
Description: | glutathione peroxidase 4 [Source:HGNC Symbol;Acc:4556] |
Percent Identity: | 74.77 % |
Parental protein coverage: | 92.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GLRILAFPCNQFG-RQEPGSNAEIKEFAAGYNVKFDMFSKICVNG-DDAHPLWKWMKVQPKGRGILGNAI |
GLRILAFPCNQFG.RQ.PGSNAEI....A..NV..DMF.KICVNG.D.AH.LWKWMKVQP.GRGILGNAI | |
Retrocopy | GLRILAFPCNQFG<RQQPGSNAEIRQLSADHNVTLDMFCKICVNG<DNAHLLWKWMKVQPEGRGILGNAI |
Parental | KWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPCYL |
K.NFT.FL..K..GCV..RYGP.EEPL..EK.LPCYL | |
Retrocopy | KRNFTRFLAGK<KGCVLERYGPLEEPLEAEKGLPCYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .06 RPM |
SRP017611_liver | 0 .00 RPM | 44 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000022744 | 1 retrocopy |
retro_fcat_1113 ,
|
Monodelphis domestica | ENSMODG00000005486 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075706 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000008347 | 4 retrocopies |