RetrogeneDB ID: | retro_fcat_1118 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:118910425..118910776(+) | ||
Located in intron of: | ENSFCAG00000015399 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.03 % |
Parental protein coverage: | 61.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KATGDWKGLRITVKLTIQNRQAQIEVVPS-ASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQM |
KA.G....LRITVKLTIQNRQ.QIEV.PS.ASALIIKALKEPPRDRK.QKN.KH.GNITFDE.VNIA.QM | |
Retrocopy | KANGN*NSLRITVKLTIQNRQPQIEVAPS>ASALIIKALKEPPRDRKEQKNSKHGGNITFDESVNIAQQM |
Parental | RHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV-ECPA |
RHRSLA.ELSGTIKEI.GTAQSVGCN.DG.HPHDIIDDINS.AV.ECPA | |
Retrocopy | RHRSLAGELSGTIKEIPGTAQSVGCNADGHHPHDIIDDINSDAV<ECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |