RetrogeneDB ID: | retro_fcat_1128 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:140974591..140974926(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TXNDC17 | ||
Ensembl ID: | ENSFCAG00000024143 | ||
Aliases: | None | ||
Description: | thioredoxin domain containing 17 [Source:HGNC Symbol;Acc:28218] |
Percent Identity: | 64.91 % |
Parental protein coverage: | 91.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GFEEFSRAVEQHHGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHVSEGCVFIYCQVGEKPYWKDP |
G.E.F..AV.QH.GKT..A....SKD..G.SW.PD.VQA.P....GL.HVSEGCVF..CQ.G..P..KDP | |
Retrocopy | GSEDFNWAVDQHNGKTGVAWLMCSKDTWGESWGPDYVQAGPAQEKGLMHVSEGCVFTSCQGGDNPC*KDP |
Parental | NNEF-RKNLKVTAVPTLLKYGTPQKLVESECL-QANLVEMLFSE |
NN.F..KNLKVT.VPTLLKYGT.QKL.ESE.L.QANL.E.LFSE | |
Retrocopy | NNDF>EKNLKVTTVPTLLKYGTFQKLAESEYL>QANLME-LFSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |