RetrogeneDB ID: | retro_fcat_1130 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:142052597..142052801(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS28 | ||
Ensembl ID: | ENSFCAG00000024931 | ||
Aliases: | None | ||
Description: | ribosomal protein S28 [Source:HGNC Symbol;Acc:10418] |
Percent Identity: | 79.41 % |
Parental protein coverage: | 98.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRL |
MDTS.VQP.KLARVTKVLGRT.SQGQCTQV.VEFMD.TS.SI..N.KGP..EG..LTLLESE.EARRL | |
Retrocopy | MDTSCVQPFKLARVTKVLGRTSSQGQCTQVPVEFMDYTSYSIFCNLKGPKHEGNILTLLESEQEARRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 65 .65 RPM |
SRP017611_liver | 0 .00 RPM | 23 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004917 | 1 retrocopy | |
Felis catus | ENSFCAG00000024931 | 3 retrocopies |
retro_fcat_1130 , retro_fcat_611, retro_fcat_752,
|
Loxodonta africana | ENSLAFG00000029923 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000028895 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003890 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067288 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000021484 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000042886 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000013597 | 3 retrocopies |