RetrogeneDB ID: | retro_fcat_1153 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:198010307..198010909(+) | ||
Located in intron of: | ENSFCAG00000015155 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000032010 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024074 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MATLIFVDKENGEPGT-RVAPKDGQKLRSKPPVKTLDGRSQVSTPRVGKMFDAQATLPKVTRKALGTVNR |
MATLIFVDKENGEPGT..VAP.DGQKLRSKPPVKTL.GRSQVSTP.VGKM.DAQATLPKVTRKALGTVNR | |
Retrocopy | MATLIFVDKENGEPGT<HVAPRDGQKLRSKPPVKTLGGRSQVSTPQVGKMLDAQATLPKVTRKALGTVNR |
Parental | ATENSVKNNGPLKQKQPNFSAKKVTEKTVKAKSTVPASDDTYPEIEKFIPFNPLDFESFDLPEEHQIAHL |
ATENSVKNNGPLKQKQPNFSAKKVTEKTVKAKSTVPASDDTYPEIEKF.PFNPLDFESFDLPEEHQIAHL | |
Retrocopy | ATENSVKNNGPLKQKQPNFSAKKVTEKTVKAKSTVPASDDTYPEIEKFFPFNPLDFESFDLPEEHQIAHL |
Parental | PLNGVPLMILDEERELEKLLHLGPPSPLKMPSQPWESNLLQSPSVLSTLDVELPPVCYDLDI |
PLNGVPLMILDEERELEKLLHLGPPSPLKMPSQPWESNLLQSPSVLSTLDVELPPVCYDLDI | |
Retrocopy | PLNGVPLMILDEERELEKLLHLGPPSPLKMPSQPWESNLLQSPSVLSTLDVELPPVCYDLDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 0 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .52 RPM |
SRP017611_liver | 0 .00 RPM | 0 .71 RPM |