RetrogeneDB ID: | retro_fcat_1154 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:202597120..202597625(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002541 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.33 % |
Parental protein coverage: | 68.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFN |
LSKGHSCYRPRRTGERK..S..G..VDANLSVLNLVIVK.GEKDIPGLTD..VP..LGPKRA.RIRKL.. | |
Retrocopy | LSKGHSCYRPRRTGERKCRSLQGYAVDANLSVLNLVIVKNGEKDIPGLTDAPVPCCLGPKRARRIRKLLS |
Parental | LSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAA-EYAKLLAK |
L.KEDDVRQ.VV...LNKEGKKPRTKAPKIQRLVTPR.LQ.K.R.IA.K....KKNKEEAA.E..KLLAK | |
Retrocopy | LFKEDDVRQCVVMGLLNKEGKKPRTKAPKIQRLVTPRNLQGKCRCIAQKT*SSKKNKEEAA>EDTKLLAK |
Parental | RMKEAKEKRQEQIAKRRRLSSLRASTSKS |
.MKE.K.K.QEQ.AKR.RL..LRASTS.S | |
Retrocopy | SMKEVKGKCQEQVAKRQRLPFLRASTSES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .41 RPM |
SRP017611_kidney | 0 .10 RPM | 411 .51 RPM |
SRP017611_liver | 1 .42 RPM | 228 .06 RPM |