RetrogeneDB ID: | retro_fcat_1175 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:40745062..40745951(-) | ||
Located in intron of: | ENSFCAG00000022018 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000031410 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AMD1 | ||
Ensembl ID: | ENSFCAG00000028033 | ||
Aliases: | None | ||
Description: | adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:457] |
Percent Identity: | 88.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RSEWDIL-LKDVQCSIISVTKTDKQEAYVLRCSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSG |
RSEWDIL.LKDVQCSIISVT.TDKQEAYVL..SESS.FVSKRRFILKT.GTTLLLK.L.PLLKLARDY.G | |
Retrocopy | RSEWDIL>LKDVQCSIISVT-TDKQEAYVL--SESSTFVSKRRFILKTSGTTLLLKMLAPLLKLARDYNG |
Parental | FDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPETRVISQP |
FDSIQSF.YSRKNF.K.SHQGYPH.NFQEEIEFLNA.FPNGAAYCMGR.NSDCWYLYTLDFPET.VISQP | |
Retrocopy | FDSIQSF-YSRKNFTKSSHQGYPHWNFQEEIEFLNAVFPNGAAYCMGRVNSDCWYLYTLDFPETQVISQP |
Parental | DQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIH |
DQTLEIL.SELDPAVMDQFYMKDG.T.KD.T.ESGIRD..PGSVIDATLFNPCGYS.NGMKSD.TYWTIH | |
Retrocopy | DQTLEILISELDPAVMDQFYMKDGITTKDATCESGIRDVVPGSVIDATLFNPCGYSINGMKSDRTYWTIH |
Parental | ITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLSSPQKIEGFKRLDCQSA |
ITPE.EFSYVSFETNLSQTSYDDL.RKVVEVFKPGKFVTTLFVNQSSKC.TVLSSPQKIEGF....CQS. | |
Retrocopy | ITPESEFSYVSFETNLSQTSYDDLVRKVVEVFKPGKFVTTLFVNQSSKCCTVLSSPQKIEGFRYFACQSI |
Parental | MFNDYNFVFTSFAKKQQQQQS |
MFNDYNFVFTSFAKK.QQQQS | |
Retrocopy | MFNDYNFVFTSFAKKHQQQQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .18 RPM | 39 .94 RPM |
SRP017611_kidney | 1 .24 RPM | 15 .77 RPM |
SRP017611_liver | 1 .01 RPM | 18 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009171 | 9 retrocopies | |
Callithrix jacchus | ENSCJAG00000005257 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006867 | 10 retrocopies | |
Equus caballus | ENSECAG00000011198 | 4 retrocopies | |
Felis catus | ENSFCAG00000028033 | 1 retrocopy |
retro_fcat_1175 ,
|
Homo sapiens | ENSG00000123505 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000006466 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013203 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010630 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005666 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000000535 | 6 retrocopies | |
Mus musculus | ENSMUSG00000075232 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012818 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000030150 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000016924 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018501 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000000585 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000205 | 4 retrocopies |