RetrogeneDB ID: | retro_fcat_1182 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:49875199..49876001(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004274 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGSAKSSPVTPARPPPHNKLLARVADPRSPSAGILRTPIQVESSPQPTLPAGEQLECPNEAQDSDPRSPT |
MGSAKSSPV..A..P.HNKLLARVADP.SPSA.ILRTPIQ.ESS.QPTLPAGEQLE.PNEAQDSDP.SPT | |
Retrocopy | MGSAKSSPVILAWFPQHNKLLARVADPCSPSAIILRTPIQMESSLQPTLPAGEQLEGPNEAQDSDPLSPT |
Parental | LGIARTPMKTSSGEP-PSPLAKQLNEVFEKEASKLNRPPELVLPLEATSPSELNLPLGTQFSLEDRMPLW |
LGIARTPMKT.SG.P.PSPL.KQLNEVFE.EASK.N.PPE.VLPLEATSPSEL.LPL.TQFSLEDRMPLW | |
Retrocopy | LGIARTPMKTGSGDP<PSPLVKQLNEVFETEASKSNLPPEPVLPLEATSPSELDLPLATQFSLEDRMPLW |
Parental | SQTELPS-KQVSSKEEAGQPSQPPTASQGSDKPLRDPETPRSSGSKHNRRKGNGKVLGRSPLTILQDDNS |
SQTELPS.KQVSSKEEAGQPSQPP.A.QGSDKPLRDPETP.SSGSKHNR.KGNGKVLGRS.LTILQDDNS | |
Retrocopy | SQTELPS<KQVSSKEEAGQPSQPPMACQGSDKPLRDPETP*SSGSKHNRQKGNGKVLGRSLLTILQDDNS |
Parental | PGTLTPRQGKRPPPLSENARALKEGAILGTGRLLETGGRVWEQGQDQDKENQHFPNLVEN |
P.TLTP.QGKRPPPLSENARALKEGAIL.TGRLLETGGRVWEQGQDQDKENQHFPNLVEN | |
Retrocopy | PRTLTP*QGKRPPPLSENARALKEGAILRTGRLLETGGRVWEQGQDQDKENQHFPNLVEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .82 RPM |
SRP017611_liver | 0 .00 RPM | 1 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013985 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014650 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000012334 | 1 retrocopy | |
Felis catus | ENSFCAG00000004274 | 2 retrocopies |
retro_fcat_1182 , retro_fcat_1942,
|
Mustela putorius furo | ENSMPUG00000016781 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012300 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000015529 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023573 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001905 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009784 | 1 retrocopy |