RetrogeneDB ID: | retro_fcat_1191 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:68990298..68990634(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | N-RAS | ||
Ensembl ID: | ENSFCAG00000019026 | ||
Aliases: | None | ||
Description: | Ras p21 [Source:UniProtKB/TrEMBL;Acc:O62638] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 59.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ |
MTEYKLV.VGA.GVGKS.LT.QLIQNHFVDE.D..IED...KQVV.DG.TC.LDI.DTA.QEEYSAMRDQ | |
Retrocopy | MTEYKLVAVGAAGVGKSTLTTQLIQNHFVDECDSNIEDFN*KQVVTDGKTCVLDIMDTASQEEYSAMRDQ |
Parental | YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV |
YMRTGEGFLCV.AINNSKSFADINLYREQ.K.VK.SD..... | |
Retrocopy | YMRTGEGFLCVCAINNSKSFADINLYREQLKQVKNSDETSVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 10 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .55 RPM |
SRP017611_liver | 0 .00 RPM | 7 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017134 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000036517 | 1 retrocopy | |
Felis catus | ENSFCAG00000019026 | 1 retrocopy |
retro_fcat_1191 ,
|
Loxodonta africana | ENSLAFG00000020706 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002675 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000022354 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004590 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000022455 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023079 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000006753 | 1 retrocopy |