RetrogeneDB ID: | retro_fcat_1206 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:101025630..101025939(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.38 % |
Parental protein coverage: | 53.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RRRCN-ALRSSRIRVHPTPTASTMPPKFDPNEIKVEYLRCTGG-EVGATSALAPKIGPLGLSPKKVGDDI |
R..CN.A.....I.V.PTP.AS.M.PKFDPNE.KV.YLRCT.G.EVGAT.ALA.KIG.L.LSPKKVGD.I | |
Retrocopy | RQWCNFAFSCPKIQVYPTPAASSMLPKFDPNEFKVVYLRCTDG<EVGATTALALKIGSLCLSPKKVGDEI |
Parental | A-KATGDWKGLRITVKLTIQNRQAQIEVVPSASAL |
A.KATG.WK.LRITVKL.IQNRQA.IEVVPSA..L | |
Retrocopy | A>KATGNWKSLRITVKLPIQNRQARIEVVPSAPNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |