RetrogeneDB ID: | retro_fcat_1211 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:127071004..127071345(-) | ||
Located in intron of: | ENSFCAG00000024830 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS26 | ||
Ensembl ID: | ENSFCAG00000013977 | ||
Aliases: | None | ||
Description: | ribosomal protein S26 [Source:HGNC Symbol;Acc:10414] |
Percent Identity: | 63.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MTKKRRNNGR-AKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYV |
MT..RR.N.R.AK.G..H.QP..C..CA.CVPKDKAIKKF.I...VEA..V.D.S..S.F...VLPKLY. | |
Retrocopy | MTNERR-NNR<AKRGHSHMQPVCCITCACCVPKDKAIKKFIIQHVVEATTVEDVSKVSIFNDCVLPKLYM |
Parental | KLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM |
KLHYCVSCAIHSKVVRN.S..A....TP.P.FRPAGA...P.PKPM | |
Retrocopy | KLHYCVSCAIHSKVVRNCSGDA*ME*TPSP*FRPAGATSQPLPKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 119 .55 RPM |
SRP017611_liver | 0 .10 RPM | 78 .95 RPM |