RetrogeneDB ID: | retro_fcat_123 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:50129211..50130465(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025078 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013209 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLSNKLTLDKLNVKAKRVIMRVDFNVPMKNNQITNNQRIKAAIPSIKFCLDNGAKSVVLMSHLGRPDGV |
MSLS.KLTLDKL.VK.KRVIMRVDFNVPMK.N.ITNNQRIKA.IPSIK.CLDNGA.SVVLMSHLGRPDGV | |
Retrocopy | MSLSKKLTLDKLDVKGKRVIMRVDFNVPMKKNEITNNQRIKASIPSIKYCLDNGARSVVLMSHLGRPDGV |
Parental | PMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKV |
PMPDKYSLEPVA.ELKSLLGKDVLFLKDCVGPEVEKACA.PAAGSVILLENLRFHVEEEGKG.D.SGNK. | |
Retrocopy | PMPDKYSLEPVAAELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGQDPSGNKL |
Parental | KAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLA |
.AEP.KIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKA.GFLMKKEL.YFA.ALE.PERPFLA | |
Retrocopy | IAEPGKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKASGFLMKKELEYFARALENPERPFLA |
Parental | ILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKI |
ILGGAKVADKIQLI.NMLDKVNEMIIGGGMA.TFLKVLNNMEIG.SLFDEEGAKIVKD.M.KA.KNGV.I | |
Retrocopy | ILGGAKVADKIQLIKNMLDKVNEMIIGGGMAYTFLKVLNNMEIGASLFDEEGAKIVKDIMAKASKNGVNI |
Parental | TLPVDFVTAEKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVARAKQIVWNGPVGVFEWEAFAQ |
T.P.DFVTA.KF.ENAK.GQATV.SGIPAGWMGLDCGPE..KKYA..VA.AK.IVWNGPVGVFEW.AFA. | |
Retrocopy | TFPTDFVTADKFEENAKVGQATVKSGIPAGWMGLDCGPETNKKYAQVVAHAKVIVWNGPVGVFEWDAFAN |
Parental | GTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVDALSSV |
GTKALMDE.VKATSRGCITIIGGGDTATCCAKWNTEDK.SHVSTGGGASLELLEGK.LPGV.ALS.. | |
Retrocopy | GTKALMDEIVKATSRGCITIIGGGDTATCCAKWNTEDKMSHVSTGGGASLELLEGKVLPGVEALSNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 282 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 345 .24 RPM |
SRP017611_liver | 0 .00 RPM | 124 .24 RPM |