RetrogeneDB ID: | retro_fcat_1260 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:41536581..41536933(+) | ||
Located in intron of: | ENSFCAG00000024008 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SOD1 | ||
Ensembl ID: | ENSFCAG00000002225 | ||
Aliases: | None | ||
Description: | superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179] |
Percent Identity: | 69.49 % |
Parental protein coverage: | 70.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LTEGEHGFHVHQFGDNTQGCTSAGPHFNPLSKK-HGGPKDQERHVGDLGNVTAGKDGVANVSMEDSLIAL |
LT.GE..FHVHQ...NTQG.TSAGPHF.PL....HG.PKDQER.V.DLGNV..GKDG.A.VSME.SLIAL | |
Retrocopy | LTKGEYRFHVHQPAGNTQGYTSAGPHFDPLXXXXHGEPKDQERSVRDLGNVISGKDGGASVSMEVSLIAL |
Parental | SGDHSIIGRT-MVVHEKRDDLGKGGNEESTQTGNAGSRLACGVIGIAK |
SGDHS..G.T...V.EK.D.LGKGG.EESTQTGNA..RLAC...GI.K | |
Retrocopy | SGDHSVTGHT>VEVREKPDGLGKGGSEESTQTGNADHRLACSAVGISK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 96 .67 RPM |
SRP017611_liver | 0 .00 RPM | 75 .01 RPM |