RetrogeneDB ID: | retro_fcat_1261 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:42276633..42276972(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002165 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.79 % |
Parental protein coverage: | 99.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRHGKAKLVILANNCPALRKSEIEYYAMLAKTGV |
VA.K..KK.LE.INSRLQL..KSG.Y.LGYKQT.............L.N.C.ALRKSE..Y.AMLAKTGV | |
Retrocopy | VATKTMKKPLE*INSRLQLTVKSGTYALGYKQTGNDHTWQAKLVILLNN-CLALRKSEMGYCAMLAKTGV |
Parental | HHYSGNNIELGTACGKYYRV-CTLAII-DPGDSDIIRSMPEQTGEK |
.HYSGN.IE.G..CGKY..V.CT.A...DPGDSDIIRSM.E.TGEK | |
Retrocopy | RHYSGNTIEWGAVCGKYCIV>CTAAVM<DPGDSDIIRSMREHTGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 74 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 230 .75 RPM |
SRP017611_liver | 0 .00 RPM | 118 .28 RPM |