RetrogeneDB ID: | retro_fcat_1280 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:85344653..85345151(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LGALSL | ||
Ensembl ID: | ENSFCAG00000001209 | ||
Aliases: | None | ||
Description: | lectin, galactoside-binding-like [Source:HGNC Symbol;Acc:25012] |
Percent Identity: | 73.37 % |
Parental protein coverage: | 95.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | DSDAAVKLDDGHLNNSLGSPVQADVYFPRLIVPFCGHIKGGMRPGKKVLVMGIV-DLNPESFAISLTCG- |
DS...VKL.DGHLNNSLGSPVQA..YFPRLIVPFCGHI.GGMRPGKK.LV.G....L.P......L..G. | |
Retrocopy | DSAPTVKLNDGHLNNSLGSPVQA-MYFPRLIVPFCGHITGGMRPGKKLLVVGAS>RLQPRELCYQLDLG> |
Parental | DSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVDGHQL |
DSEDP.A.VAIELKA.FTD.Q.LRNSCIS.ERGE.QSAIPYFPFIPDQ.FRVEILCEHP.FR.FVDGHQ. | |
Retrocopy | DSEDPSANVAIELKAGFTDWQRLRNSCISRERGEGQSAIPYFPFIPDQLFRVEILCEHPCFRAFVDGHQX |
Parental | FDFYHRIQTLSAI-DTIKINGDLQITKLG |
....H.I..LSA..DTIKI.GDLQI.KLG | |
Retrocopy | XXXXHHIKMLSAV>DTIKIHGDLQIAKLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 3 .81 RPM |
SRP017611_liver | 0 .00 RPM | 3 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001067 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000156 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015222 | 1 retrocopy | |
Felis catus | ENSFCAG00000001209 | 1 retrocopy |
retro_fcat_1280 ,
|
Felis catus | ENSFCAG00000024418 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003226 | 2 retrocopies | |
Mus musculus | ENSMUSG00000042363 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011885 | 2 retrocopies |