RetrogeneDB ID: | retro_fcat_1281 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:85463313..85463688(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024367 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.02 % |
Parental protein coverage: | 94.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQLFVRAQELHTLEVTGQ-ETVAQIKAHVASLEGIAPEDQVVLLAGTPLEDEATLGQCGVEALTTLEVAG |
MQLFV.A.EL.T........TVAQIKAHVASLEGIA.EDQVVLLAG.PLEDEATL.QCG..ALTTLEVAG | |
Retrocopy | MQLFVCAWELYTSRSPDRRQTVAQIKAHVASLEGIASEDQVVLLAGMPLEDEATLDQCGLKALTTLEVAG |
Parental | RMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKK |
.MLGGKVHG.LA..GKVR.QT.KV.KQE..KKKT.RAK..MQYN...VN.VP.FGKK | |
Retrocopy | HMLGGKVHGLLAHVGKVREQTSKVVKQE--KKKTSRAKHWMQYNQSLVNIVPPFGKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 50 .61 RPM |
SRP017611_kidney | 0 .10 RPM | 156 .75 RPM |
SRP017611_liver | 0 .00 RPM | 85 .02 RPM |