RetrogeneDB ID: | retro_fcat_1286 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:92745136..92745465(+) | ||
Located in intron of: | ENSFCAG00000018600 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSFCAG00000028400 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 78.38 % |
Parental protein coverage: | 73.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RLSKATGKMVENSPSPLPERAIYGFVLF-LSSQFGFILYLVWAFIPETWLNSLGL-TYWPQKYWAIALPV |
R..KATGKMVENSPS.LPE.AI.GFVLF.LSSQFGFILY..W.FIP..WLNSL.L.TYWPQKY.A.ALP. | |
Retrocopy | RVVKATGKMVENSPSLLPEKAICGFVLF<LSSQFGFILYIIWDFIPKSWLNSLDLLTYWPQKYCAVALPI |
Parental | YLLITIVIGYVLLFGINMMSTSPLNSIHTITDNYAKNQQRK |
YL.I.IVIGYV.L.GINM.ST.PLNSIHTITDNYAKNQ..K | |
Retrocopy | YLFIPIVIGYVHLLGINMRSTFPLNSIHTITDNYAKNQGQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .99 RPM |
SRP017611_liver | 0 .00 RPM | 7 .78 RPM |