RetrogeneDB ID: | retro_fcat_1289 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:97256793..97257032(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000023228 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MARTMEPLAKKIFKGVLVVELVGVFGAYFLFNKMNTSQD-FRQTMSKKFPFILEVYYKSIEQSGMYGVRE |
MA.T.EPLAKKIFKGVLVVE.VGVFGAYFLFNKM.TSQ..FRQTMSKKFPFILEVYYKS.E.SGMYGVRE | |
Retrocopy | MAHTVEPLAKKIFKGVLVVEFVGVFGAYFLFNKMDTSQH<FRQTMSKKFPFILEVYYKSVEPSGMYGVRE |
Parental | QDQEKWLNSKN |
.D..KWL.SKN | |
Retrocopy | *DE*KWLKSKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .49 RPM |
SRP017611_liver | 0 .00 RPM | 15 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017579 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013008 | 2 retrocopies | |
Felis catus | ENSFCAG00000023228 | 2 retrocopies |
retro_fcat_1289 , retro_fcat_1750,
|
Homo sapiens | ENSG00000218739 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025368 | 2 retrocopies | |
Mus musculus | ENSMUSG00000062691 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000029876 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000033858 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000040303 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000020689 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006884 | 7 retrocopies |