RetrogeneDB ID: | retro_fcat_1317 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:2716843..2717127(-) | ||
Located in intron of: | ENSFCAG00000031343 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002277 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.41 % |
Parental protein coverage: | 50.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | PVDLSKWSGPLSLQEVDERPQHP-LQVKYTGAEVDEL-GKVLTPTQVKNRPTSIAWD-GLDPGKLYTLVM |
P.D.SKW.G.LSLQE.D...Q.P.L.VKY.GAEV.E..G...TPTQV.N.PT.I.W..G..PGK...LVM | |
Retrocopy | PGDPSKWPGTLSLQEADRQLQNP>LKVKYAGAEVNEV<GQRGTPTQVRNWPTRISWE<GPHPGKRCPLVM |
Parental | TDPDAPSRKDPKYREWHHFLVVNMKGND |
TDPDAPSRKDPKYREWHHFLVVNMKGND | |
Retrocopy | TDPDAPSRKDPKYREWHHFLVVNMKGND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 289 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 418 .72 RPM |
SRP017611_liver | 0 .00 RPM | 101 .39 RPM |