RetrogeneDB ID: | retro_fcat_1335 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:44495549..44495996(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAPRE1 | ||
Ensembl ID: | ENSFCAG00000007783 | ||
Aliases: | None | ||
Description: | microtubule-associated protein, RP/EB family, member 1 [Source:HGNC Symbol;Acc:6890] |
Percent Identity: | 66.45 % |
Parental protein coverage: | 56.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ANYDGKDYD-PVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVRKNPG |
A..DGK.YD.P.....G..T..A.S.V.PAL.KP.KPLSSS.AA..RPIAT.RTTA.P.AG..VV.K.P. | |
Retrocopy | ASCDGKHYD<PCNCQ*GR-TSAASSPVVPALSKPRKPLSSSHAALLRPIATLRTTASPEAGC-VV*KDPA |
Parental | VGNGDD-EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFV |
.GN.D...A.ELMQQV.VLKL..E.LEKERDF.FGKLRN..L.C.E.EG.NNPVLQRI...LYAT.EGFV | |
Retrocopy | AGNRDG<QAVELMQQVSVLKLIIENLEKERDFCFGKLRNFQLSCLEVEGGNNPVLQRIMYVLYATYEGFV |
Parental | IPDEGGPQ-EEQEEY |
.PDEGGPQ.EEQEEY | |
Retrocopy | VPDEGGPQ<EEQEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .63 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .44 RPM |
SRP017611_liver | 0 .00 RPM | 7 .08 RPM |