>retro_fcat_1338
ATGGTGGACTATAGCGTGTGGGACCACATCGAGGTGTCTGACGATGAGGACGAGACGCACCCCAAAATCGATACAGCCAG
TCTCTTCTGCTGGCGGCACCAGGCCCGGGTGGAGCGCATGGAGCAGTTCCAGAAGGAGGAGAAGGAGCTGGAGAGGGGCT
GCCGCCAGTGCAGGCGCAAGGTGGCCGAGTGCCAGTGGAGGCTGAAGAAGCTGGAGGCCGCGGAGGGCGAGGGCAGCAAG
GCAGAGCTAGAGTGGCTGCAGGCTGAGGCTCAGCAGCTGCGCAAGGAGGAGCGGAGCTGGGAGCAGAAGCTGGAGGAGAT
GCGCAAGAAGGAGAAGAGCATGCCCTGGAACGTGGACACACTCAGCAAGGACGGCTTCAGCAAGAGCATGGTCAATACCA
AGCCAAAGCAGACGGAGGAGTCGTCAGAGGAAGTGAGGGAGCAGAAACACAAAACGTTCGTGGAGAAGTATGAGAAACAG
ATCAAGCACTTTGGCATGCTCCATCACTGGGACGACAGCCAGAAGTACCTGTCGGACAATGTCCATCTGGTGTGCGAGGA
AACCACCAACTACCTTGTCATCTGGTGCACTGACCTAGAGGTGGAGGAGAAATGTGCACTCATGGAGCAGGTGGCCCACC
AGACCATCGTCATGCAGTTCATCCTGGAGCTGGCTAAGAGCCTGAAGGTGGATCCCTGTGCCTGCTTCCGGCAGTTCTTC
ACCAAGATCAGGACAGCCGACTGCCAGTACATGGAGGGCTTCAACGACGAACTGGAGGCCTTCAAGGAGCGCGTGCGGCG
CCACGCCAAGCTGCGCATGGAGAAGGCCATGAAGGAATAGGAGGAGCAGCAGCTCCGGAAGTGGCTCGGCCCGGGCGGTT
TGGACCCCGTGGAGGTCTACCAGTCTCTCTCTGAGGAACTACAGAAATGCTTCAACATGAAAGATGTGCAGATGCTTCAA
GACGCCATCAGCAAGATGGACCGCACCGATGCTAAGTACCACATGCAGCCCTGCATCGACTCTGGCCTCTGGGTCCCCAA
CTCCAAGTCCAGCGAGGCCAAGGAGAGGGAGGAGACAGGCCCTGGGGACCCCTTGCTGGAAGCTGGCCCCAAGCCAGGAG
ACAAGAAGGATGTCAGT
ORF - retro_fcat_1338 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.03 % |
Parental protein coverage: |
99.74 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MVDYSVWDHIEVSDDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELERGCRECRRKVAECQRRLKE |
| MVDYSVWDHIEVSDDEDETHP.IDTASLF.WRHQARVERMEQFQKE..ELERGCR.CRRKVAECQ.RLK. |
Retrocopy | MVDYSVWDHIEVSDDEDETHPKIDTASLFCWRHQARVERMEQFQKEEKELERGCRQCRRKVAECQWRLKK |
|
Parental | LEAAEGEGSKAELERLQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLSKDGFSKSMVNTKPEQAEE |
| LEAAEGEGSKAELE.LQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLSKDGFSKSMVNTKP.Q.EE |
Retrocopy | LEAAEGEGSKAELEWLQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLSKDGFSKSMVNTKPKQTEE |
|
Parental | ESEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQ |
| .SEEVREQKHKTFVEKYEKQIKHFGML..WDDSQKYLSDNVHLVCEET.NYLVIWC.DLEVEEKCALMEQ |
Retrocopy | SSEEVREQKHKTFVEKYEKQIKHFGMLHHWDDSQKYLSDNVHLVCEETTNYLVIWCTDLEVEEKCALMEQ |
|
Parental | VAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEY |
| VAHQTIVMQFILELAKSLKVDP.ACFRQFFTKI.TAD.QYMEGFNDELEAFKERVR..AKLR.EKAMKE. |
Retrocopy | VAHQTIVMQFILELAKSLKVDPCACFRQFFTKIRTADCQYMEGFNDELEAFKERVRRHAKLRMEKAMKE* |
|
Parental | EEEERRKRLGPGGLDPVEVYESLPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKS |
| EE...RK.LGPGGLDPVEVY.SL.EELQKCF..KDVQMLQDAISKMD.TDAKYHMQ.CIDSGLWVPNSKS |
Retrocopy | EEQQLRKWLGPGGLDPVEVYQSLSEELQKCFNMKDVQMLQDAISKMDRTDAKYHMQPCIDSGLWVPNSKS |
|
Parental | SEAKEGEEAGPGDPLLEAGPKPGDKKDVS |
| SEAKE.EE.GPGDPLLEAGPKPGDKKDVS |
Retrocopy | SEAKEREETGPGDPLLEAGPKPGDKKDVS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .57 RPM |
41 .89 RPM |
SRP017611_kidney |
0 .72 RPM |
36 .17 RPM |
SRP017611_liver |
0 .10 RPM |
15 .87 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1338 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1338 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.