RetrogeneDB ID: | retro_fcat_134 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:35709823..35710618(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000024437 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSFCAG00000031288 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:UniProtKB/Swiss-Prot;Acc:P61246] |
Percent Identity: | 98.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS | |
Retrocopy | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT.GYLLRLFCV | |
Retrocopy | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTNGYLLRLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA.QSIYPLHDV | |
Retrocopy | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKARQSIYPLHDV |
Parental | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDET.AKVE.ADGYEPP.QESV | |
Retrocopy | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETSAKVEQADGYEPPAQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .80 RPM | 108 .69 RPM |
SRP017611_kidney | 3 .61 RPM | 585 .06 RPM |
SRP017611_liver | 1 .31 RPM | 279 .92 RPM |