RetrogeneDB ID: | retro_fcat_1357 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:93762059..93762464(-) | ||
Located in intron of: | ENSFCAG00000007116 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASF1A | ||
Ensembl ID: | ENSFCAG00000023561 | ||
Aliases: | None | ||
Description: | anti-silencing function 1A histone chaperone [Source:HGNC Symbol;Acc:20995] |
Percent Identity: | 74.26 % |
Parental protein coverage: | 66.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVK |
.LVGPV.AGRH...F.A.APNP.LIPD.DAVG.TVVLITCTY.GQEFIRVG..VNNEY.ETE..EN.P.K | |
Retrocopy | LLVGPVSAGRHV-LFPAEAPNPRLIPDVDAVGITVVLITCTY*GQEFIRVGCHVNNEYVETEVWENLPGK |
Parental | PDFSKLQRNILASNPRVTRFHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASKGWSTSENSLNV |
PDFSKLQRNILA.NPRVTR.HI.WEDN.EKLE.AE.SNPNL...LSTDALPSASKGW......L.. | |
Retrocopy | PDFSKLQRNILAPNPRVTRVHIIWEDNIEKLEEAEISNPNL*LPLSTDALPSASKGWMAYVKKLTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .94 RPM |
SRP017611_liver | 0 .00 RPM | 6 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013007 | 1 retrocopy | |
Felis catus | ENSFCAG00000023561 | 1 retrocopy |
retro_fcat_1357 ,
|
Myotis lucifugus | ENSMLUG00000013053 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034346 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004979 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000592 | 2 retrocopies |