RetrogeneDB ID: | retro_fcat_1392 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:22542485..22542943(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM3C | ||
Ensembl ID: | ENSFCAG00000023087 | ||
Aliases: | None | ||
Description: | family with sequence similarity 3, member C [Source:HGNC Symbol;Acc:18664] |
Percent Identity: | 64.33 % |
Parental protein coverage: | 67.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | AKLVVAVAVFL-LTFYVISQVFEIKMDASLGNLFARSALDTAVRSTKPPRYKCGISKACPEKHFAFK-MA |
AKLVVA....L..T.YV.SQVF.I.MDAS.GNLF.RSA...A..ST....Y.C..SKACPE..FAFK.M. | |
Retrocopy | AKLVVAATAWL<TTHYVTSQVFGIQMDASFGNLFVRSAWVMAA*STDLSGYNCEMSKACPENQFAFK>MV |
Parental | SGAANVVGPKICLEDNVLMSGVK-NNVGRGINVALANGKTGEVLDTKYFDMWGGDVAPFIEFLKSIQDGT |
S.AANVVGPKICL...VLMSGV...NV.RG..VA...GK..EVL.T.YFD.WG.DVAPF.EF.KS..DG. | |
Retrocopy | SRAANVVGPKICLT-SVLMSGVM<DNVRRGASVASVEGKIEEVLGTQYFDTWGKDVAPFMEFVKSMPDGK |
Parental | IVLMGTYDDGATKLNDE |
IVL.GTYDDGA..L.DE | |
Retrocopy | IVLTGTYDDGAARLSDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 266 .50 RPM |
SRP017611_kidney | 0 .10 RPM | 28 .34 RPM |
SRP017611_liver | 0 .00 RPM | 46 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003224 | 1 retrocopy | |
Felis catus | ENSFCAG00000023087 | 1 retrocopy |
retro_fcat_1392 ,
|
Homo sapiens | ENSG00000196937 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010029 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006906 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015478 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015103 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016229 | 2 retrocopies |