RetrogeneDB ID: | retro_fcat_1404 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:68622024..68622423(+) | ||
Located in intron of: | ENSFCAG00000003775 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000005639 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.16 % |
Parental protein coverage: | 97.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | HLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKP |
HLQWMVV.NCSSFLIKRNKQTYSTEP.NLKA.NS..YN.LI..K.VG.E..A.GKG.VVV.K.R.GQ.KP | |
Retrocopy | HLQWMVVGNCSSFLIKRNKQTYSTEPSNLKAYNSC-YN*LIRYKSVGTELVAKGKGIVVVIKWRLGQ*KP |
Parental | ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRRRARPTKSS |
ATS.V..TINKNA.A.LSSIRHMI.KNKY.PDL.M.............KPVMVKR.RA....SS | |
Retrocopy | ATSCVWITINKNALAILSSIRHMIHKNKYCPDLHMXXXXXXXXXXXXXKPVMVKRTRAHFSTSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 106 .97 RPM |
SRP017611_liver | 0 .00 RPM | 65 .20 RPM |