RetrogeneDB ID: | retro_fcat_1419 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:89974322..89974717(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSFCAG00000002358 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:P63275] |
Percent Identity: | 69.34 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAG-YVTHLMKRIQRGPVRGIS |
G.V.T.TVK.A.RVI.E.YYT.L..DFHT.....EE.AIIPS.KL.NK.AG.YVT.LMK..QRGP.RGIS | |
Retrocopy | GHVLTRTVKRATRVITETYYTHL-DDFHTDTAL*EETAIIPSQKLHNKAAG>YVTCLMKQMQRGPGRGIS |
Parental | IKLQEEERERRDNYVPEVSALDQEII-EVDPDTKEMLK-LLDFGSLSNLQVTQPTVGMNFKTPRGAV |
.K.QEEERERR.NY..EVSALDQ.I..EVDPDTKEMLK..L.FG..SNL.VTQPT..MNFKTP.G.V | |
Retrocopy | NK-QEEERERRANYISEVSALDQQIL<EVDPDTKEMLK<TLGFGTPSNLEVTQPTIRMNFKTPCGEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 347 .30 RPM |
SRP017611_liver | 0 .00 RPM | 177 .82 RPM |