RetrogeneDB ID: | retro_fcat_1421 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:100602742..100603108(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000029433 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004853 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.8 % |
Parental protein coverage: | 64.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQTIK.VVVGDGAVGKTCLLISYT.NKFP.E.VPTVFD.YAVTVMIGGEPYTLGLFDT.GQED.DRLRPL | |
Retrocopy | MQTIKGVVVGDGAVGKTCLLISYT-NKFPLE*VPTVFDSYAVTVMIGGEPYTLGLFDTTGQEDHDRLRPL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP |
SYPQTDVF.VCF.VVSPSSFENVKE.WVP.ITHHCPKTP..LVGTQI.L.DDP | |
Retrocopy | SYPQTDVFPVCFPVVSPSSFENVKENWVPQITHHCPKTPCFLVGTQINLHDDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 38 .65 RPM |
SRP017611_liver | 0 .20 RPM | 17 .29 RPM |