RetrogeneDB ID: | retro_fcat_1428 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:7357415..7357785(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSFCAG00000009745 | ||
Aliases: | UBA52, CEP52, UBCEP2 | ||
Description: | Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40 [Source:UniProtKB/Swiss-Prot;Acc:P63052] |
Percent Identity: | 69.6 % |
Parental protein coverage: | 96.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSDYNIQKESTLHLVLRL |
..TL.GKT..LE.EPSDT.ENVKA.I.DKEGI.PDQQ.L.F...K.LE.....SDYNIQKESTL.LVL.L | |
Retrocopy | MQTLIGKTSGLENEPSDTTENVKAQIKDKEGILPDQQHLTF>ISK*LESNHICSDYNIQKESTLSLVLHL |
Parental | RGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK |
RGGII.PSL.QL.QK.NC.K.IC..CYA.L.P.AVNCR.KKCGHTN.L.P.KKVK | |
Retrocopy | RGGIINPSLFQLTQKSNCNKTICFQCYAYLQPCAVNCR-KKCGHTNKLHPQKKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 56 .81 RPM |
SRP017611_kidney | 0 .10 RPM | 162 .11 RPM |
SRP017611_liver | 0 .00 RPM | 106 .65 RPM |