RetrogeneDB ID: | retro_fcat_1433 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:19261507..19261858(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSFCAG00000029233 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 81.2 % |
Parental protein coverage: | 98.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGE |
FKD.GKTP.EPEV.IH.IRITLTS.NV.SLEKV.ADL.RGAKEKNL.VKGPVRMPTKTLRITTRKT..GE | |
Retrocopy | FKDPGKTPGEPEVVIHQIRITLTSCNVQSLEKVRADLLRGAKEKNLVVKGPVRMPTKTLRITTRKTLRGE |
Parental | GSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
GSKTWD.FQ.R...RLIDLH.PSEIV.QITSI..EPGV.VEVT.ADA | |
Retrocopy | GSKTWDCFQVRSCRRLIDLHGPSEIVLQITSIGLEPGVKVEVTSADA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .18 RPM |
SRP017611_liver | 0 .00 RPM | 76 .53 RPM |