RetrogeneDB ID: | retro_fcat_1454 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:76473275..76473724(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000005760 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.05 % |
Parental protein coverage: | 58.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SAPYKLTFTAGGAIEF-GQRMLQVASQASRGEAPNGAYGYSYMPSGAYVFPPPVANGMYPCPPGYPYPPP |
.A.YKLTFT..G.IE..GQ.MLQV.SQ.S.GEA.NGAY.YS.MPS.A.VFP.P..N...P.PPGY.YP.P | |
Retrocopy | TALYKLTFTPTGTIEL<GQ*MLQVTSQSSKGEASNGAYRYSHMPSRAFVFPLPITNRICPYPPGYFYPSP |
Parental | PPEFYPGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNVYMPTT |
P..FYP..PMM...M...QP..PPY.G.MEPP.S.PDVPSTP.AEAKA.EAAA.A.YN..N.HN.YMP.. | |
Retrocopy | PSDFYPELPMMN--ME*LQPWQPPYSGLMEPPASSPDVPSTPVAEAKATEAAAGASYNRDNKHNAYMPRN |
Parental | QPPPPPYYPPEDK |
Q..PP.YYP.EDK | |
Retrocopy | QFLPPSYYPMEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 178 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 90 .90 RPM |
SRP017611_liver | 0 .00 RPM | 31 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000037619 | 1 retrocopy | |
Felis catus | ENSFCAG00000005760 | 1 retrocopy |
retro_fcat_1454 ,
|
Homo sapiens | ENSG00000132471 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009241 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000000070 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009381 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007725 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001625 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006045 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008640 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009660 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021421 | 2 retrocopies |