RetrogeneDB ID: | retro_fcat_1457 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:79871695..79872086(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL14 | ||
Ensembl ID: | ENSFCAG00000015655 | ||
Aliases: | None | ||
Description: | ribosomal protein L14 [Source:HGNC Symbol;Acc:10305] |
Percent Identity: | 73.28 % |
Parental protein coverage: | 62.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RVAYVSFGPHAG-KLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRQAWQK |
RV.YVSFGPH.G.K....VDVI.QN.ALV.GPCTQ.R.QAMPFK.M.LTDFILKFPHS..QKYV...W.K | |
Retrocopy | RVTYVSFGPHTG>KRAWTVDVIHQNKALVAGPCTQLRIQAMPFKSMRLTDFILKFPHSTQQKYVQHTWWK |
Parental | ADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKLEVRKLQKAALLKASP |
A.I..KWAATR..K.I..RERKAK.TDFD.YKVMKAK...NRIIKL.VRKLQKAALLK.SP | |
Retrocopy | AGISIKWAATRCTK*IKTRERKAKLTDFDCYKVMKAKRGGNRIIKLDVRKLQKAALLKVSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 147 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 624 .84 RPM |
SRP017611_liver | 0 .00 RPM | 277 .19 RPM |