RetrogeneDB ID: | retro_fcat_1458 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:80628130..80628527(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF10 | ||
Ensembl ID: | ENSFCAG00000015390 | ||
Aliases: | None | ||
Description: | TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa [Source:HGNC Symbol;Acc:11543] |
Percent Identity: | 69.63 % |
Parental protein coverage: | 61.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | EGAMSNGVYVLPSAANGDVKPVVSST-PLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISL |
EGA.S.GVYVL.S..NG.VK.V.S...P..DF.MQLEDYTP.IPDAV..YYL..AG.E..DP.II.LISL | |
Retrocopy | EGAGSTGVYVLWSRTNGEVKAVMSRS<PVIDFSMQLEDYTPMIPDAVPSYYLHGAGSETLDPGIIQLISL |
Parental | --AAQKFISDIANDALQHCKMKGTASGSSRSKSKDRKY-TLTMEDLTPALS-EYGINVKKPHYFT |
..AAQK.ISDIA.DALQH.KMK.TAS.SS.S.SKDRK..TLTMEDLTPA.S..YGI.VK.PH.FT | |
Retrocopy | AAAAQKSISDIASDALQH*KMKDTASSSSGSNSKDRKQ>TLTMEDLTPAVS>DYGIDVKRPH*FT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .43 RPM |
SRP017611_kidney | 0 .10 RPM | 33 .39 RPM |
SRP017611_liver | 0 .00 RPM | 13 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006498 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000814 | 1 retrocopy | |
Equus caballus | ENSECAG00000007794 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000008412 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000008886 | 1 retrocopy | |
Felis catus | ENSFCAG00000015390 | 1 retrocopy |
retro_fcat_1458 ,
|
Macropus eugenii | ENSMEUG00000008216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024459 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007743 | 1 retrocopy | |
Mus musculus | ENSMUSG00000043866 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004894 | 1 retrocopy |