RetrogeneDB ID: | retro_fcat_1482 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:51136841..51137385(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000027696 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.35 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | SARRRRRCNALRSSRIRVHPTPTASTMPPKF-DPNEIKVEYLRCTGGEVGATSALAPKIGPLGLSPKKVG |
SA.RR..CN...SS.I..HPTP..ST..PK..DPN.I.V.YL.CT.GEVGA.S.LAPKI.PLGLSPK..G | |
Retrocopy | SAGRRQKCNCFQSS*I*AHPTPVTSTTWPKL<DPNKINVVYLKCTSGEVGAASVLAPKIDPLGLSPKNDG |
Parental | DDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDE-IVNI |
DDI..A.GDWKGLR.TVKLT....QA.IEV.PSASALIIKALKEP...RKKQKNIKHSGNITFD...VNI | |
Retrocopy | DDITEAAGDWKGLRMTVKLT----QAEIEVEPSASALIIKALKEPLKGRKKQKNIKHSGNITFDK<VVNI |
Parental | ARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
..QMRH.SLA.ELSG.IKEILGTA.SV.CNVDG..PHDI....NSG.VECPA | |
Retrocopy | VQQMRH*SLAGELSGIIKEILGTA*SVDCNVDGHQPHDI----NSGIVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |