RetrogeneDB ID: | retro_fcat_1495 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:89141265..89141689(+) | ||
Located in intron of: | ENSFCAG00000030386 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSFCAG00000028400 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046] |
Percent Identity: | 68.92 % |
Parental protein coverage: | 96.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SHRLSKATGKMVENSPSPLPERAI-YGFVL-FLSSQFGFILYLVWAFIPETWLNSLGLTYWPQKYWAIAL |
S.RLSKATGKMVENS..PLPERA..YGFVL.FLSSQFGFILYLVWAF.P...LNSLGL.YWPQKY...AL | |
Retrocopy | SERLSKATGKMVENSLPPLPERAT<YGFVL<FLSSQFGFILYLVWAFLPKSRLNSLGLAYWPQKYREVAL |
Parental | PVYLLITIVIGYVLLFGINMMSTSPLNSIHTITD-NYAKNQQRKNYQEEAIPALRDIP-ISEVNQMFFLA |
...LL.T.VI.YVLLFGI...STSPLN.IHTI........QQ.K.YQ.E.IPALR.IP....VN.MFFLA | |
Retrocopy | SACLLVTTVITYVLLFGIDTISTSPLNPIHTIRE>SAKSQQQ-KRYQ-EPIPALRNIP<LNDVNRMFFLA |
Parental | AKEHHTQN |
A.E..T.N | |
Retrocopy | AEEPDTKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .99 RPM |
SRP017611_liver | 0 .00 RPM | 7 .78 RPM |