RetrogeneDB ID: | retro_fcat_1499 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:8880107..8880594(-) | ||
Located in intron of: | ENSFCAG00000029000 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSFCAG00000031431 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 74.85 % |
Parental protein coverage: | 87.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VHSHPWETVTTAAMQKYPNPMNPSVVGVDVLDR-HIDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTY |
...HPWETV.T.A.QKY.NPM..S.VGVDVLDR.H.DP.GK.HS.RLL.TE.GLPS.VKSLIGAARTKTY | |
Retrocopy | ISNHPWETVSTVAVQKYLNPMTSSLVGVDVLDR>HTDPFGKFHSQRLLGTERGLPSTVKSLIGAARTKTY |
Parental | VQEHSVVDPVDRTMELKSTNISFTNMVSVDERLIYKPHPQDPGKTVLTQEAIITVKGVSLSSYLEGLMAS |
VQ.HSVV.PVD.TMEL.S..ISFTNMVSVD.RL.YKPH.QDP.KT..TQEAII.VKGV.LSSYLEGL..S | |
Retrocopy | VQKHSVVVPVDKTMELRSASISFTNMVSVDDRLLYKPHSQDPEKTLVTQEAIIIVKGVCLSSYLEGLTVS |
Parental | TISSNANKGREAMEWVIHKLNAE |
T.S.NA..GREAMEW.IH.LN.E | |
Retrocopy | TTSANAKSGREAMEWLIHTLNVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 23 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 39 .47 RPM |
SRP017611_liver | 0 .10 RPM | 26 .18 RPM |