RetrogeneDB ID: | retro_fcat_1507 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:43113301..43114046(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP4 | ||
Ensembl ID: | ENSFCAG00000027017 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] |
Percent Identity: | 83.94 % |
Parental protein coverage: | 58.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYD |
FLYDLVMTH.LEWPSL.AQ.LPD.TRPEGKDFS.HRLVLGTHT.DEQN.LVIA.VQLPNDDAQFDASHY. | |
Retrocopy | FLYDLVMTHGLEWPSLIAQ*LPDETRPEGKDFSTHRLVLGTHTWDEQNLLVIARVQLPNDDAQFDASHYG |
Parental | SEKGEFGGFGSVSGKIEIEIKINHEGEVNRA-RYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN |
SEKGEFGGFGSVSG..EIEIKINHEGEVNR....MP..PC..ATKT.S.DVLVFDYTKHPSK.DPSGECN | |
Retrocopy | SEKGEFGGFGSVSGNVEIEIKINHEGEVNRP>HDMPRDPCVTATKTSSGDVLVFDYTKHPSKLDPSGECN |
Parental | PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL |
PDL.L.GHQKEGYGLSWNPNLSGHLLS.SDDHTI.LWDIS.V.KEG.VVD.KTIFTGHTAVVE.VS.HL. | |
Retrocopy | PDLHLHGHQKEGYGLSWNPNLSGHLLSDSDDHTILLWDISTVLKEGEVVDVKTIFTGHTAVVENVSRHLP |
Parental | HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN |
.ESLFGSVADDQK.MI.DT.SNNTSK.S.SVDAH.AEVN | |
Retrocopy | PESLFGSVADDQKFMI*DTPSNNTSKASPSVDAHAAEVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 95 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .01 RPM |
SRP017611_liver | 0 .00 RPM | 30 .73 RPM |