RetrogeneDB ID: | retro_fcat_1511 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:59821846..59822247(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000028656 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.14 % |
Parental protein coverage: | 65.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQ-ILKEPKMAASIMNPYVK |
..TSVVR.FAKLVR.P.Q..GI.G.YATA.YSA.SKQNK...V.KELLR.AQ.ILKEP.M.AS.MNP..K | |
Retrocopy | YITSVVRLFAKLVRQPFQKNGIKGLYATAIYSA-SKQNK---VDKELLR-AQ<ILKEPRMTASVMNPCIK |
Parental | RSVKVKSLNDMTAKERFSPLTCNLINLLAENGRLNNTPGVVSAFSTMMSVHRGEVPCTVTTASPLDEPTL |
.SVKVKSLNDM.AKERF..LT.NL.NLL.ENG.LN..PGV.SA.ST.MS.H.GEVPCTVTTA.PLDE.TL | |
Retrocopy | CSVKVKSLNDMKAKERFYLLTSNLVNLLVENGHLNTIPGVISALSTAMSIHPGEVPCTVTTAPPLDESTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 102 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 275 .99 RPM |
SRP017611_liver | 0 .00 RPM | 90 .98 RPM |