RetrogeneDB ID: | retro_fcat_1518 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:39449379..39449700(+) | ||
Located in intron of: | ENSFCAG00000031842 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000031188 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.67 % |
Parental protein coverage: | 99.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAVAAASRFSGLLGRSGAQRGRSMSSGAHGEEGSARMWKALTYF-VALPGVGVSMLNVFLKSHHGEHERP |
.AVAA.S..SGLLG.SG...G.SMS.G.H.E..S...WKALT.F..ALP.VGV..LNVFLKSHH.EHE.P | |
Retrocopy | IAVAALSQVSGLLGQSGT*LGQSMSRGTHSEDDSPHVWKALTSF<LALPSVGVHVLNVFLKSHHAEHEKP |
Parental | EFV-AYPHLRIRSKPFPWGDGNHTLF-HNSHVNPLPTGYED |
EF...YP.L.I.S..FPWGDG.HTLF..N.HVNPLPTGYED | |
Retrocopy | EFI<PYPYLLIKSTSFPWGDGDHTLF<PNCHVNPLPTGYED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 121 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 233 .32 RPM |
SRP017611_liver | 0 .00 RPM | 88 .05 RPM |